Additional gene prediction analysis

Additional gene prediction analysis www.selleckchem.com/products/wortmannin.html and functional annotation was performed within the Integrated Microbial Genomes – Expert Review (IMG-ER) platform [50]. Genome properties The genome consists of a 2,309,262 bp long chromosome with a G+C content of 30.3% (Table 3 and Figure 3). Of the 2,180 genes predicted, 2,110 were protein-coding genes, and 70 RNAs; 42 pseudogenes were also identified. The majority of the protein-coding genes (77.7%) were assigned with a putative function while the remaining ones were annotated as hypothetical proteins. The distribution of genes into COGs functional categories is presented in Table 4. Table 3 Genome Statistics Figure 3 Graphical circular map of the chromosome.

From outside to the center: Genes on forward strand (color by COG categories), Genes on reverse strand (color by COG categories), RNA genes (tRNAs green, rRNAs red, other RNAs black), GC content, GC skew. Table 4 Number of genes associated with the general COG functional categories Acknowledgements We would like to gratefully acknowledge the help of Olivier D. Ngatchou-Djao (HZI) for drafting the manuscript, and Helga Pomrenke (DSMZ) for growing H. praevalens cultures. This work was performed under the auspices of the US Department of Energy Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No.

DE-AC02-06NA25396, UT-Battelle and Oak Ridge National Laboratory under contract DE-AC05-00OR22725, as well as German Research Foundation (DFG) INST 599/1-2.
A representative genomic 16S rRNA sequence of strain MH2T was compared using NCBI BLAST under default AV-951 settings (e.g., considering only the high-scoring segment pairs (HSPs) from the best 250 hits) with the most recent release of the Greengenes database [3] and the relative frequencies, of taxa and keywords (reduced to their stem [4]) were determined, weighted by BLAST scores. The most frequently occurring genera were Desulfurella (38.7%), Desulfovibrio (15.2%), Deferribacter (10.8%), Thermotoga (10.8%) and Hippea (8.6%) (44 hits in total). Regarding the single hit to sequences from members of the species, the average identity within HSPs was 99.9%, whereas the average coverage by HSPs was 82.7%. Among all other species, the one yielding the highest score was Desulfurella multipotens, which corresponded to an identity of 89.6% and an HSP coverage of 82.6%. (Note that the Greengenes database uses the INSDC (= EMBL/NCBI/DDBJ) annotation, which is not an authoritative source for nomenclature or classification.

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